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BIOLOGY 350- ANIMAL PHYSIOLOGY ( ATP count-PDF) Room 109 Biology Watch these videos Windows Media VERSION Part 1 & part 2 Dr. Thomas Kaufman's seminar. These are big files. You have to download to your computer, then open to watch. Think about what significance do fruit flies serve for breakthroughs in understanding diseases that inflict humans? OLD EXAMS (used in a summer course; MS Word 2003 format) |
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Fall 2011: Biology Building
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Lecture: Biology, Rm. 109 lecture and Rm 202 for lab Labs are scheduled Monday, Wed and Friday 10:30-1:30 each day. Lecture 8:00 AM to 10:00 AM. |
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Text
book: It is listed in Kennedy's Book store under "Bio 350" Title: Eckert Animal Physiology: Mechanisms and Adaptations, Fifth Edition, by David Randall, Warren Burggren, and Kathleen French. http://www.whfreeman.com/newcatalog.aspx?isbn=0716738635 |
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BIOLOGY 350- ANIMAL PHYSIOLOGY | |||||
Instructor: | |||||
Dr.
Robin L. Cooper RLCOOP1@email.uky.edu Office: Morgan building-226 Tel: 257-5950 Office Hours: email for time WWW Home page (go to) |
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Teaching assistant for the course: |
Lab Facilitator | ||||
Ms. WenHui Wu
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Mr.
Michael Crum |
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Down load PDF files: | Course rules (see below) | Chapter questions to focus on (go to) |
Jump to on this page: |
Course schedule (see below) (go to) | Download PPT files (go to) |
Biology 350 SUMMER 2011 Instructor: Cooper Text: Animal Physiology (5th Edition) by Randall, Burggren, and French
Lecture: Biological
Sciences, Rm. 109; MTWRF 08:00AM-10:00AM Since this is a summer course the hours of the lecture and lab will be intermixed. So some lecture material will be given during the lab time and some lab related material will be given during the lecture times. Start time:
TA: COURSE OUTLINE ECHO files (just click on link and then click on purple box that opens): A: W ....... 5/11 .......Neuronal function .......Chp 4&5, ( I know it
is going fast so you might need this as
guidance) Echo 05122011A or 05122011 B F....... 5/13 .......Neuronal function-communication .......Chp 6 (podcast 05132011) F.......5/13..............................REVIEW W....... 5/18 .......Sensory Mechanisms .......Chapt. 7 (podcast 05182011A, 05182011B) ECHO 05182011A, 05182011B (some ECHO recordings did not have sound on, so you can use the podcast for hearing the lecture)
ECHO 05232011A (Only A) T
5/24.....Exam
2 (2 hours) TH....... 5/26 ......Endocrine: Thyroid, parathyroid, adrenal and pancreas
.......Chapt. 9 (Medical aspects of endocrine-ppt) F ...... 5/27 .......Cardiovascular .......Chapt. 12 (Podcast 05272011A, 05272011B)
W 6/1 we will still be on respriation....Excretion GI & Renal .......Chp13 & 14 REVIEW Followed by lab time (Podcasts 06012011A, 06012011B) ECHO 06012011A, 06012011B
F.........6/3......Digestion
.......Chapt. 15 and review of all course content .... (MOVE
ch 14 to here for final exam material) (Podcast 06032011A, 06032011B, 06032011C) ECHO 06032011A, 06032011B, 06032011C M .....6/6 .. . Catch up time...................REVIEW ......Lab write up due and make up exams are taken podcast 06062011A, 06062011B ECHO 06062011A, 06062011B
Summer 2011 In this course you will gain knowledge of and an appreciation for the amazing diversity of strategies animals have developed for being able to survive, reproduce, and THRIVE in every ecosystem on this planet. Penguins survive beautifully in Antarctica, but humans can only survive there using extraordinary measures we would die within minutes if left naked on the shelf. You will learn WHY penguins survive and we cannot; why some people are diabetic, and how insulin can control this disease. You will also find out what happens to your body during exams (sure stress, but what IS stress and why is it sometimes very useful, other times, deadly?). You'll be able to amaze your friends, your parents, your employers with your grasp and knowledge of the intricacies of animal physiology, why starfish 'explode' if placed in freshwater, what commonalties we share with whales, and much more. So, get 'psyched' and get ready to work! There is a lot to learn, but if you keep at it consistently, you'll keep your stress levels down and enjoy the course. One way of defining life is by the living organism's ability to maintain an internal environment which is different from the external environment. Furthermore, living organisms maintain a relatively constant internal environment in spite of the changing external environment. This phenomena was first clearly described by the great French physiologist Claude Bernard. The object of this course will be for you to learn how various organ systems function to bring about a relatively stable internal environment. To fully understand how organs accomplish homeostasis you must be able to apply the basic principles of mathematics, chemistry, physics and biochemistry. Your understanding of homeostasis and the underlying principles will be tested four times during the semester. Each examination may consist of multiple choice, true/false, short answer and/or essay questions. Each of the first 3 examinations will have a possible 90 points. The fourth exam will be a mix final exam and material covered since the last exam worth 130 points. The fourth exam will have a substantial part of comprehensive material. There will only be one make-up exam if one of the other exams is missed. The make-up will take place immediately after the fourth exam during the second hour of the two hours allotted during the final exam period. The makeup will be a comprehensive exam covering the material during the entire course. Exams may include take home essays or essays assigned in class prior to exam dates to take home and complete prior to each exam. The grades on these essays may factor into the lecture exam grade. The essays are to be emailed and/or printed out as the assignment will state. These essays will be posted on blackboard and/or the class www page. It will be the students responsibility to check the blackboard and/or www page for assignments and the due dates. There is a 3 hour lab period with this course. The object of this lab is for you to ask questions about any material that you did not understand in either the lectures. Questions are listed for each chapter which you should understand. These can be discussed during the lab time. You will receive two points for coming to lab. Lab is the time to ask! Your teaching assistants are at these labs to help you; however, if you do not prepare yourself by reading and trying to understand the course material they will not be able to help. Teaching assistants need feedback at these sessions; they are not there to lecture and add new material. They are there to help you understand the material, therefore you must know before you arrive what you do not understand. Attendance will be taken at each lab and you will be given 2 points each time you attend. Short quizzes may also be given (6 points) at the beginning of class and count in the grading of the lab part of the course. The fraction of the lab grade for the course will equal 85 points (the total points from assignments and attendance will be normalized so that 85 total points will be obtained for a perfect record). (9 lab days x 6 points) + (9 lab days x 2 points for attending and working) + (10 points for lab performace) + (7 points for having data in a meaningful manner) = 85 points total. Lab report: 15 points Lab performance: 10 points for lab performace. Counted in lab grade. This is graded based on you getting data to your facilitator for the section and participating in the laboratory excercises. GRADES Total
= 500 points UNIVERSITY
POLICY ON EXCUSED AND UNEXCUSED ABSENCES ABSENCE
FROM LAB, MISSED HOMEWORK ASSIGNMENTS MAKE
UP EXAMS If you miss two exams you will be encourage to take an incomplete in the course. In all cases, you must present a doctor's note, or other (as outlined above) to the instructors within 3 calendar days of missing any exam. There is no make up exam for EXAM #4 (Final). If you miss the final, you will not be able to take an incomplete in the course without discussing with us the reasons for missing the exam, and then filling out and signing an incomplete form with the department. If we feel an incomplete is warranted, we will determine the conditions necessary to satisfy the incomplete at that time. REGRADING
EXAMS CHEATING
AND PLAGIARISM DEAD WEEK As previously noted, "Dead Week" refers to the final week of classes prior to final examinations. In 2009, the University Senate modified the Dead Week Policy as follows: 5.2.4.6 Dead Week [US: 4/13/09]
1. The last week of instruction of a regular semester is termed "Dead
Week. In the rest of these Rules, this term also refers to the last
three days of instruction of a summer session and a summer term. |
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Ch. 1: Chapter 1: 1, 2 ........PDF of text handed out in class ................PDF 1-Evol. Med PDF or MS WORD ................PDF 2- Ice Fish PDF or MS WORD Look at oxidative stress paper (PDF) Ch. 2: NA Ch. 3: 8, 12, 13, 18, 19, 20, 21, 30 Lactate, not pyruvate, is neuronal aerobic glycolysis end product: an in vitro electrophysiological study. {PDF}
Ch. 4: 1, 10,11, 13, 15, 19 Ch. 5: 3, 4, 6. 9, 16, 19 Chapter 6: 2, 3 . Also fun sensory activities in lab as well as going over the exam. Chapter 6: 7, 8, 12, 14, 18 Chapter 7:1, 2, 3, 7, 10, 14 Mean quantal content HW Handed out. See these if you loose the one in recitation: PDF , MS word or Gif file Chapter 8: 3, 6, 9 Chapter 10: 1, 3, 6, 12, 19, 22 here is a general link (go to) Chapter 11: 2, 13 |
You should be able to answer these questions (you might see them again) ! Reading: in chapter 9
Questions for recitation
1. Discuss the differences between autocine, paracrine, neurocrine and endocrine secretion.
2. What are pheromones?
3. Explain how catecholamines can have so many different actions.
4. Discuss examples that illustrate the intimate functional association of the nervous and endocrine systems.
5. How can a single second messenger, (e.g. cAMP or IP3) induced by binding of different hormones, mediate different cellular responses in different tissues?
6. Explain how
a small number of hormone molecules can elicit cell responses involving
millions of times as many molecules? |
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EXTRA Note:
To the issue about CHOLESTEROL and fluidity of biological membranes within normal temperatures. There maybe differences in the teaching on this point in Cell Biology and Animal Physiology so keep in mind which system, animal or bacteria, and the normal operating temperatures for the organisms.
In relation to Bio350 ANIMAL physiology and NOT bacterial cells the point is that cholesterol decreases fluidity in biological membranes of mammals.
Lets see the text by Lodish et al., (4th edition, 2000) Molecular Cell Biology
Page 165: "Membrane cholesterol is another major determinate of bilayer fluidity....... The net effect of cholesterol on membrane fluidity varies, depending on the lipid composition. ...... At the high concentrations found in eukaryotic plasma membranes, cholesterol tends to make the membranes less fluid at growth temperatures near 37C." |
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Chapter 6 {ppt-a} {PDF-a}, {ppt-b} {PDF-b} Chapter 7 {ppt-a} {PDF-a}, {ppt-b} {PDF-b} |
chapter 9 {ppt-a; ppt--b} {PDF-a; PDF-b} chapter 12 {ppt-a; ppt-b} {PDF-a; PDF-b} chapter 13 {ppt-a; ppt-b} {PDF-a; PDF-b} chapter 14 {ppt-a; ppt-b} {PDF-a; PDF-b} chapter 15 {ppt-a; ppt-b} {PDF-a; PDF-b} chapter 16 {ppt} {PDF} chapter 17 {ppt} {PDF}
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Neat Information: About folic acid (pdf) Male Brain (pdf) Drug MDMA (ectasy) (PDF) neg pH (pdf) Imprint genes (pdf) Music & Brain (pdf) Kiss & Run (pdf) Neat PDF on nerve gas agents (PDF) The leech model and glia cells (PDF)
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1. SPUR- Society for Promotion of Undergraduate Research. It
is a great new club for anyone in research, or who is interested in
doing research.By the way, for those of you that were interested in
getting a lab position, the first step is to fill out an application,
the link below will take you directly to it. The application may seem
long/unneccesary, but it is not a 2. TRI- BETA UK Beta Beta Beta Biology Honors Society http://web.as.uky.edu/Biology/TriBeta/default.htm
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OVERHEADS used in class:
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