Back to Home Page

A&S 500, sec 008
Animal Senses

WEB PAGE IN DEVELOPMENT

Spring 2013

course flier (here)

Back to teaching page

Spring 2013:


Instructor:

Dr. Robin L. Cooper
RLCOOP1@email.uky.edu
Office: Biology, rm
226
Tel: 257-5950
Office Hours: email for appt.
WWW Home page (go to)


Dr. Ann Morris
ann.morris@uky.edu
Office: Biology, rm
215
Tel: 257-8823
Office Hours: email for appt.
WWW Home page (go to)


Jump to on this page: Course outline (go to) download PDF Schedule (go to) download PDF

COURSE OUTLINE

Download syllabus (here PDF)

Prerequisite: BIO 350 or PGY 412 or permission of instructor

Meeting times: Tue and Thurs 9:30 to 10:45 AM, Place Biology Build. in basement room B01

Required Text:
Howard C. Hughes, Sensory Exotica: A World beyond Human Experience
(Paperback), 978-0262582049, The MIT Press.
http://www.amazon.com/Sensory-Exotica-World-beyond-Experience/dp/026258204X/

Read reviews of text book : http://www.sciencemag.org/content/287/5456/1211.1.full

Another review as well (here- PDF)

Recommended only:
1. Gunther K. H. Zupanc, Behavioral Neurobiology: An Integrative Approach, 978- 0198700562, Oxford University Press, USA. This text will provide background on the
physiology of nervous systems as well as provide additional explanation of sensory systems
with more figures. It is highly recommended for those students will little background in
neurophysiology.

2. David Eagleman. Incognito: The Secret Lives of the Brain Publisher: Pantheon (May 31, 2011) English, ISBN-10: 0307377334; ISBN-13: 978-0307377333


Schedule

TOPICS AND READINGS-TENTATIVE SCHEDULE
Please note that this is a tentative schedule and may be modified depending on how the course is progressing. All changes will be announced in advance, and students will be well aware of them-particularly regarding what is going to be included on exams.

Class Topics, due dates, Relevant Text Material

January 10 (Cooper) Introduction to sensory systems & signals; Library research methods, TEXT Hughes 1-3 (Cooper). Fun activities.
January 15 (Cooper) Sound, hearing & bat echolocation, TEXT Hughes 4
January 17(Cooper) Sound, hearing & bat echolocation, TEXT Hughes 4 (Echo 360)
January 22(Cooper) Biosonar & avoidance, TEXT Hughes 5-7
January 24 (Cooper) Biosonar & avoidance, Paper1 discussion, Quiz 1 MOVED to FEB 12 (ECHO 360)
January 29 (Cooper) Navigation & compasses, TEXT Hughes 8-9 (ECHO 360)
January 31 (Cooper) Navigation & compasses, Abstract of a topic due (ECHO 360)
February 5 (Cooper) A bit behind... Chapters Hughes 8-9.. for Feb 7 just Finished Echolatation and some mangentoreception (ECHO 360)

(Proprioceptors, Handouts and ppt will be posted -Later)
February 7 (Cooper) Proprioceptors, tension receptors; Handouts and ppt will be posted
........Paper2 discussion, Related to term paper: Reference list and articles (as PDFs) due (ECHO 360) might be an audio glitch.
February 12 (Cooper) Go to lab to record and observe neural responses of proprioceptors
......TEXT Hughes 10-11 QUIZ 1 new date (take home exam) (ECHO 360)
February 14 EXAM DUE We will discuss in class the answers (Group discussion) (ECHO 360)
February 19 (Morris) Vision, TEXT Hughes 12
February 21 (Morris) Vision, TEXT Hughes 12
February 26 (Morris) Vision, TEXT Hughes 12
February 28 Day off to work on your term papers
March 5 New plan.....JOHN NICHOLLS: Central integration of visual system. (Podcast....23 mB)

March 7 (Cooper) --- Try to wrap up mechanoreception ppt file. (ECHO360)

(Cooper) chit chat on TEXT Hughes 10-11 -will try to compete this task.

March 12 (11-16) - Monday through Saturday - Spring Vacation - Academic Holidays
March 14 (11-16) - Monday through Saturday - Spring Vacation - Academic Holidays

March 19 ** CHANGE IN SCHEDULE......moved to Feb 28 JOHN NICHOLLS: Central integration of visual system.

............. (Cooper) Electroreception & communication; Outline of research a <500 word article for the public, i.e. newspaper or magazine due depending on which one you did alreday

............. Electroreception & communication; TEXT Hughes 12,13,14,16 (ECHO 360)

March 21 (Cooper) continue Electroreception ( echo 360 )
March 26 (Cooper)continue Electroreception (did not get to Chemoreception) (echo 360 )
March 28 (Cooper) , TEXT Hughes 17-19 Quiz 2, (test on proprioception, vision, Nicholls talk, mechanorection and electroreception) Short answers and maybe some multiple choice. In class exam.)
April 2 (Cooper) Chemoreception;(ECHO 360)
April 4 (Cooper) Chemoreception;; Draft paper due (ECHO 360)
April 9 (Cooper) Chemoreception; Primary Paper discussion (posted in BB in content); (ECHO 360, voice might not be working)
April 11 (Cooper) Read primay paper that was posted in BB. Here it is again "Evolution of insect olfaction (PDF)"

.....Also cover some fun aspect of crayfish olfaction (PDF), vision with blind cave crayfish (PDF) & social interactions (PDF)

............. ECHO 360

April 16 (Cooper) Cover book chapters on Olfaction & pheromones; TEXT .............Hughes 17-19 & start on .............thermoreception
April 18 (Cooper) thermoreception (ECHO 360)
April 23 (Cooper) Students talk for about 2-3 minutes each about their research papers and topics.

April 25 (Cooper) Dr. Tim McClintock will lecture to class on his research area of olfaction (Podcast) .............http://www.mc.uky.edu/physiology/mcclintock/mcclintock.asp


April 30 Final papers due

Quiz 3 (Finals week) Thursday May 2 start at 9 AM not 8 AM


Papers:

Mechanoreception (PDF chapter 8 hand out)

Evolution of Insect Olfaction; Review of chemoreception in water insects; Pain in flies; Evolutionary Physiology 1994

 

Supplementary Materials
Readings from the primary literature will be assigned on occasion. These articles will be posted on Blackboard for you to download and print.

Course Description

Advanced study of how animals use remarkable sensory abilities to communicate, navigate, and detect prey, predators and mates. We will focus on extreme and unusual sensory systems such as echolocation, electroreception, and magnetoreception, as well as vision, smell, touch, proprioception, muscle tenson and hearing.

Course Objectives

By the end of this course, you should be able to:
1. Have a conceptual understanding of animals possessing different sensory abilities and limitations that are shaped by their evolutionary history as assessed by examination.
2. Understand the how physical stimuli travel and how they are transduced by sensory cells into chemical responses in animals as assessed by examination.
3. To appreciate how sensory stimuli and simplified and analyzed by sensory systems as assessed by examination
4. Develop a basic knowledge of the sensory processing as assessed by examination.
5. Be able to solve problems and critically analyze research papers in the field of Neuroscience.
6. Be able to discuss and develop new ideas and suggest future research directions in the field of Neuroscience.

The goals of this course are that the learning outcomes will be met by the students

Course Work/Grading

Overall
The course will be a mix of lecture and student-led discussion. Readings will be taken from the text and from the primary research literature. The main output of the course will be a term paper on your chosen subject in animal senses. Wewill provide greater detail on the term paper, but basically you will read recent primary research papers on one subject and will explain their meaning and how they relate to each other. Graduate students will be required to read more papers than undergrads. We will help you to decide on a term paper topic, your topic proposal is due in Week 4, and the titles of all of your research papers are due in Week 5 (see schedule).

Term paper:

Topic- 5 pts
References- 20 pts
Summaries (Abstract 25points, article of <500 words layman article 25 points) - 50 pts
Outline- 50 pts
First draft- 20 pts
Final draft- 100 pts

Exams: 3 exams = 100 points each


Class participation (questions in class, paper discussions, online discussions)- 15 pts
Late assignments will lose 10% of total point possible for every day late. Lateness will be calculated based on the time and date listed on Blackboard, and you assignment will be counted when it is submitted on BB/Turnitin or by email, depending on which method is requested by the instructor.

Undergraduate students will be provided with a Midterm Evaluation (by the midterm
date) of course performance based on criteria in syllabus

Final grades will be based on % of total points earned and will be assigned as follows:

Undergraduates:
A = 90 - 100 %
B = 80 - 89.99 %
C = 70 - 79.99 %
D = 60 - 69.99 %
E = less than 60 %

Graduates:
Topic- 5 pts
References- 20 pts
Two Summaries (Abstract 12.5 points for each, two article of <500 words layman each article 12.5 points each) - 50 pts
Outline- 50 pts
First draft- 20 pts
Final draft- 100 pts

Exams: 3 exams = 100 points each

Quizzes: 3 each 25 pts = 75 pts

A = 92 - 100 %
B = 82 - 91.99 %
C = 72 - 81.99 %
D = 62 - 71.99 %
E = less than 62 %


Writing assignments for course:
Abstract: Write an abstract on a topic of interest related to current literature on the topic of choice
Short newspaper type report:Write a <500 word article for the public, i.e. newspaper or magazine
Review article/term paper: There will be one formal manuscript write-up due this semester. The manuscript is intended to mimic the review manuscript writing and submission processes required for scientific publication, and it will utilize results from reviewing scientific literature. The manuscript must be written independently (no group submissions). The draft and final submission dates are listed above in class schedule. The writing format described by the Journal of Comparative Biochemistry and Physiology - Part A: Molecular & Integrative Physiology will be used or Annual Reviews in Physiology. As an example, go to the journal's web page and look up information for authors at: http://www.elsevier.com/wps/find/journaldescription.cws_home/525464/description
The "guide to authors" provided by the journal provides the formatting guidelines that must be followed for this assignment. Additional information for this assignment will be made available through the course website.

All exams are required of all students. If you are unable to take an examination as scheduled, it is your responsibility to contact the instructors before the exam. Unexcused absences from an exam will result in a score of zero for that test. Homework and problem sets that are turned in late will be marked down a point each day they are late, and they must be turned in before those that were turned in on time are returned.

Attendance
Required.

Format
In this course, you will learn the fundamentals sensory systems by lectures, problem sets, independent/group study, and in-class exercises. Please note that you are responsible for all the material in the assigned chapters, including figures, summaries, and "boxes," regardless of whether it is covered in lectures. Thus, you will be responsible for covering some material from the text or readings on your own.

Blackboard/Class Communications
Course announcements, assignments, lecture outlines and additional materials will be posted online using Blackboard. Exams and homework dates will remain fixed. Updates to this syllabus (regarding topics and reading) will be posted; please check periodically. You will also receive important course announcements via your UK e-mail account. If you do not use your UK e-mail account, you need to activate it. It is strongly recommended that you check your e-mail regularly. The instructors may send messages-sometimes with attachments-to the class using this medium. You should also feel free to e-mail the instructors if you have any questions or problems. Feel free to call the instructors as well, if you prefer a more personal communication. We are also available in our officies. If you would like to meet with us at another time, please don't hesitate to e-mail or to call, and we can schedule a time to meet.

Honesty and Civility
You must abide by UK's Code of Conduct which prohibits:

http://www.uky.edu/StudentAffairs/Code/index.html

1. Academic dishonesty and impropriety, including plagiarism and academic cheating.
2. Interfering or attempting to interfere with or disrupting the conduct of classes or any other normal or regular activities of the University.
We take plagiarism and other forms of cheating very seriously. If you have any questions as to whether something is plagiarism, please ask me, or, if that's not possible, assume that it is and don't do it!

Disabilities

(Room 2, Alumni Gym, 257-2754 )
Any student who needs accommodation because of a disability should contact Dr. Cooper privately to discuss the specific situation as soon as possible. The Office of Disability Resources and Services. They can coordinate reasonable accommodations for students with documented disabilities.

There is an online form that faculty are asked fill out and submit...
http://www.uky.edu/StudentAffairs/DisabilityResourceCenter/testAcc.html
So, let Dr. Cooper know if he needs to fill out the form.

Back to TOP